FAR
Revision as of 16:38, 10 June 2022 by Israel.herrera (talk | contribs)
Description
FAR is a software that removes adapter sequences from your sequencing reads by overlap alignment using the Needleman Wunsch algorithm (default) or a quality-based variant of the Needleman Wunsch algorithm. The Needleman Wunsch algorithm is a global exact string-matching algorithm, which offers maximal sensitivity and outperforms heuristic algorithm such as BLAST. Therefore the alignment of an adapter sequence to a read is very accurate.
Environment Modules
Run module spider far to find out what environment modules are available for this application.
System Variables
- HPC_FAR_DIR - installation directory
- LD_LIBRARY_PATH - run time library path