Samblaster
Revision as of 21:24, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
samblaster is a fast and flexible program for marking duplicates in read-id sorted paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file.
When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.
Required Modules
Serial
- samblaster
System Variables
- HPC_SAMBLASTER_DIR - installation directory
- HPC_SAMBLASTER_DIR - executable directory
Validation
- Validated 4/5/2018