LDhat
Revision as of 21:21, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.
Required Modules
Serial
- ldhat
System Variables
- HPC_LDHAT_DIR - installation directory
Additional Information
The following programs are included:
- convert: Simple manipulation of DNA sequence data
- pairwise: Parametric and nonparametric analyses of recombination
- interval: Estimation of variable recombination rates
- rhomap: Estimation of variable recombination rates in the presence of hotspots
- fin: Simulation of genetic variation data in LDhat format