BloomTree

Description

The Sequence Bloom Tree (SBT) is a method that will allow you to index a set of short-read sequencing experiments and then query them quickly for a given sequence. The code base provided here is an implementation of SBT written in C++ and is open source.

Required Modules

Serial

Bloomtree

System Variables

HPC_BLOOMTREE_DIR - installation directory

Citation

If you publish research that uses Bloomtree you have to cite it as follows:

Brad Solomon and Carl Kingsford. Fast search of thousands of short-read sequencing experiments. Nature biotechnology. 2016 doi: 10.1038/nbt.3442