Ngmlr
Revision as of 21:22, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Required Modules
Serial
- ngmlr
System Variables
- HPC_NGMLR_DIR - installation directory
- HPC_NGMLR_BIN - executable directory
Citation
If you publish research that uses ngmlr you have to cite it as follows:
Accurate detection of complex structural variations using single molecule sequencing