Panseq

Description

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Panseq determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. It readily extracts regions unique to a genome or group of genomes, identifies SNPs within shared core genomic regions, constructs files for use in phylogeny programs based on both the presence/absence of accessory regions and SNPs within core regions.

Environment Modules

Run module spider REPLACE to find out what environment modules are available for this application.

System Variables

• HPC_REPLACE_DIR - installation directory
• HPC_REPLACE_BIN - executable directory