Package-GFE
Revision as of 14:21, 7 October 2015 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:SoftwareBiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|package-gfe}} |{{#vardefine:url|https://github.com/Ta...")
Description
This software package is for estimating allele and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for multiple diploid individuals from a population by a maximum-likelihood (ML) method.
Required Modules
Serial
- package-gfe
System Variables
- HPC_{{#uppercase:package-gfe}}_DIR - installation directory
Citation
If you publish research that uses package-gfe you have to cite it as follows:
Maruki, T., and Lynch, M., (2015) Genotype-frequency estimation from high-throughput sequencing data. Genetics (in press).