Sputnik
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Description
Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors.
Required Modules
Serial
- sputnik
System Variables
- HPC_{{#uppercase:sputnik}}_DIR - installation directory
Validation
- Validated 4/5/2018