NxTrim

Description

nxtrim website  

Software to remove Nextera Mate Pair adapters and categorise reads according to the orientation implied by the adapter location. This software is not commercially supported.

Environment Modules

Run module spider nxtrim to find out what environment modules are available for this application.

System Variables

• HPC_NXTRIM_DIR - installation directory

Citation

If you publish research that uses nxtrim you have to cite it as follows:

O’Connell, Jared, et al. "NxTrim: optimized trimming of Illumina mate pair reads." Bioinformatics 31.12 (2015): 2035-2037.