3d-dna

Description

This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017.

Required Modules

Serial

3d-dna

System Variables

HPC_3D-DNA_DIR - installation directory
HPC_3D-DNA_BIN - executable directory

Citation

If you publish research that uses 3d-dna you have to cite it as follows:

Dudchenko, O., Batra, S.S., Omer, A.D., Nyquist, S.K., Hoeger, M., Durand, N.C., Shamim, M.S., Machol, I., Lander, E.S., Aiden, A.P., et al. (2017). De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science eaal3327. Published online ahead of print on March 23, 2017.