SQANTI
Revision as of 21:24, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length transcript sequencing, which are commonly returned in a fasta file format without any extra information about gene/transcript annotation or attribute description. SQANTI provides a wide range of descriptors of transcript quality and generates a graphical report to aid in the interpretation of the sequencing results.
Environment Modules
Run module spider sqanti to find out what environment modules are available for this application.
System Variables
- HPC_SQANTI_DIR - installation directory
- HPC_SQANTI_BIN - executable directory
- HPC_SQANTI_UTI - utilities directory
- HPC_SQANTI_DOC - documentation directory
- HPC_SQANTI_EXE - example directory