SMARTdenovo
Revision as of 21:24, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
SMARTdenovo is a de novo assembler for PacBio and Oxford Nanopore (ONT) data. It produces an assembly from all-vs-all raw read alignments without an error correction stage. It also provides tools to generate accurate consensus sequences, though a platform dependent consensus polish tools (e.g. Quiver for PacBio or Nanopolish for ONT) are still required for higher accuracy.
Environment Modules
Run module spider smartdenovo to find out what environment modules are available for this application.
System Variables
- HPC_SMARTDENOVO_DIR - installation directory
- HPC_SMARTDENOVO_BIN - executable directory