OptiType
Revision as of 21:22, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
Required Modules
Serial
- optitype
System Variables
- HPC_OPTITYPE_DIR - installation directory
- HPC_OPTITYPE_BIN - executable directory
- HPC_OPTITYPE_EXE - test directory
- HPC_OPTITYPE_DOC - documentation directory
- HPC_OPTITYPE_CONF - config directory