Difference between revisions of "ALLPATHS-LG"
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Moskalenko (talk | contribs) m (Text replace - "Usage policy" to "Usage Policy") |
Moskalenko (talk | contribs) m (Text replace - "{{#if: {{#var: mod}}|==Execution Environment and Modules== {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}" to "==Required Modules== modules documentation ===Serial=== *{{#var:app}}") |
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or 454 FLX reads, or a mix of these with short reads. | or 454 FLX reads, or a mix of these with short reads. | ||
<!--Modules--> | <!--Modules--> | ||
| − | + | ==Required Modules== | |
| − | + | [[Modules|modules documentation]] | |
| + | ===Serial=== | ||
| + | *{{#var:app}} | ||
* HPC_ALLPATHSLG_BIN - executable directory | * HPC_ALLPATHSLG_BIN - executable directory | ||
* HPC_ALLPATHSLG_DOC - documentation directory | * HPC_ALLPATHSLG_DOC - documentation directory | ||
Revision as of 16:54, 10 August 2012
Description
ALLPATHS-LG is a short read assembler. It has been designed to use reads produced by new sequencing technology machines such as the Illumina Genome Analyzer. This version has been optimized for, but not necessarily limited to, reads of length 100 bases. ALLPATHS is not designed to assemble Sanger or 454 FLX reads, or a mix of these with short reads.
Required Modules
Serial
- allpathslg
- HPC_ALLPATHSLG_BIN - executable directory
- HPC_ALLPATHSLG_DOC - documentation directory