SOAPdenovo-Trans: Difference between revisions
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Moskalenko (talk | contribs) m Text replace - "<!--Versions--> ==Available versions== .* <!--Modules-->" to "<!--Modules-->" |
Moskalenko (talk | contribs) m Text replace - "Usage policy" to "Usage Policy" |
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See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
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{{#if: {{#var: policy}}|==Usage | {{#if: {{#var: policy}}|==Usage Policy== | ||
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used) | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used) | ||
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Revision as of 16:33, 10 August 2012
Description
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.
Execution Environment and Modules
To use SOAPdenovo-Trans with the environment modules system at HPC the following commands are available:
Get module information for soapdenovo-trans:
$module spider soapdenovo-trans
Load the default application module:
$module load soapdenovo-trans
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
HPC_SOAPDENOVOTRANS_DIR - directory where SOAPdenovo-Trans is located. HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located