Difference between revisions of "Sputnik"
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Moskalenko (talk | contribs) m (Text replace - "<!--Location--> {{App_Location|app={{#var:app}}|{{#var:ver}}}}" to "") |
Moskalenko (talk | contribs) m (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==") |
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Revision as of 02:03, 10 August 2012
Description
Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors.
Available versions
- 1.0
Execution Environment and Modules
To use sputnik with the environment modules system at HPC the following commands are available:
Get module information for sputnik:
$module spider sputnik
Load the default application module:
$module load sputnik
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_SPUTNIK_DIR - directory where sputnik is located.