SOAPdenovo-Trans: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
Moskalenko (talk | contribs) m Text replace - "{{App_Description|app={{#var:app}}|url={{#var:url}}}}|}}" to "{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} " |
||
| Line 20: | Line 20: | ||
<!--Description--> | <!--Description--> | ||
{{#if: {{#var: url}}| | {{#if: {{#var: url}}| | ||
{{App_Description|app={{#var:app}}|url={{#var:url}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets. | SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets. | ||
<!--Location--> | <!--Location--> | ||
Revision as of 01:54, 10 August 2012
Description
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets. Template:App Location
Available versions
- 1.01
Running the application using modules
To use SOAPdenovo-Trans with the environment modules system at HPC the following commands are available:
Get module information for soapdenovo-trans:
$module spider soapdenovo-trans
Load the default application module:
$module load soapdenovo-trans
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
HPC_SOAPDENOVOTRANS_DIR - directory where SOAPdenovo-Trans is located. HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located