SOAPdenovo-Trans: Difference between revisions
Jump to navigation
Jump to search
Created page with " Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|soapdenovo-trans}} |{{#vardefine:url|http://soap.genomics.org.cn/SOAPdenovo-Trans.html}} <!--CONFIGUR..." |
No edit summary |
||
| Line 42: | Line 42: | ||
HPC_SOAPDENOVOTRANS_DIR - directory where SOAPdenovo-Trans is located. | HPC_SOAPDENOVOTRANS_DIR - directory where SOAPdenovo-Trans is located. | ||
HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located | HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located | ||
Revision as of 01:32, 20 July 2012
Description
{{{name}}} website
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.
Template:App Location
Available versions
- 1.01
Running the application using modules
To use SOAPdenovo-Trans with the environment modules system at HPC the following commands are available:
Get module information for soapdenovo-trans:
$module spider soapdenovo-trans
Load the default application module:
$module load soapdenovo-trans
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
HPC_SOAPDENOVOTRANS_DIR - directory where SOAPdenovo-Trans is located. HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located