Difference between revisions of "Blast"

Revision as of 18:21, 7 October 2011

{{{name}}} website
See Blast Program Selection Guide and the main blast website for more details.

The software blast is installed on the cluster in /apps/blast/.

To use blast with the environment modules system at HPC the following commands are available:

Get module information for blast:

$module spider blast

Load the application module:

$module load blast

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

HPC_BLAST_DIR - directory where blast is located.

@@ Line 34: / Line 34: @@
 See [http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=ProgSelectionGuide Blast Program Selection Guide] and the main blast website for more details.
 <!--Location-->
-{{App_Location|app={{#var:app}}|{{#var:ver}}}}
-ADD EXECUTABLE AND LIBRARY LOCATION DETAILS FOR INSTALLED VERSIONS OR REMOVE THIS MESSAGE
+==Location==
+The software {{#var:app}} is installed on the cluster in /apps/{{#var:app}}/.
 <!-- -->
 {{#if: {{#var: mod}}|==Running the application using modules==
-{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}
+To use {{#var:app}} with the environment modules system at HPC the following commands are available:
+Get module information for {{lc: {{PAGENAME}}}}:
+ $module spider {{#var:app}}
+{{#if: {{#var:intel}}|Load Intel compiler: {{#tag:pre|$module load intel/{{#var:intel}}}}|}}{{#if: {{#var:mpi}}|Load MPI implementation: {{#tag:pre|$module load {{#var:mpi}}}}|}}
+Load the application module:
+ $module load {{#var:app}}
+The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
+HPC_{{uc:{{#var:app}}}}_DIR - directory where {{#var:app}} is located.
+|}}
 {{#if: {{#var: exe}}|==Manual execution instructions==
 WRITE INSTRUCTIONS ON RUNNING THE APP WITHOUT MODULES HERE|}}