Difference between revisions of "Rnabloom"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|RNA-Bloom}} |{{#vardefine:url|https://github.com/bcgsc/RNA-Bl...") |
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RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types: | RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types: | ||
| − | + | * single-end/paired-end bulk RNA-seq (strand-specific/agnostic) | |
| − | + | * paired-end single-cell RNA-seq (strand-specific/agnostic) | |
| − | + | * long-read RNA-seq (ONT cDNA/direct RNA, PacBio cDNA) | |
| − | |||
Latest revision as of 16:53, 19 August 2024
Description
RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types:
- single-end/paired-end bulk RNA-seq (strand-specific/agnostic)
- paired-end single-cell RNA-seq (strand-specific/agnostic)
- long-read RNA-seq (ONT cDNA/direct RNA, PacBio cDNA)
Environment Modules
Run module spider RNA-Bloom to find out what environment modules are available for this application.
System Variables
- HPC_RNA-BLOOM_DIR - installation directory
- HPC_RNA-BLOOM_BIN - executable directory