Difference between revisions of "Genblastg"
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Latest revision as of 18:19, 5 February 2024
Description
genBlast is a program suite, consisting of two programs: genBlastA and genBlastG. genBlastA parses local alignments, or high-scoring segment pairs (HSPs) produced by local sequence alignment programs such as BLAST and WU-BLAST and identify groups of HSPs.
Environment Modules
Run module spider genblastg to find out what environment modules are available for this application.
System Variables
- HPC_GENBLASTG_DIR - installation directory
- HPC_GENBLASTG_BIN - executable directory
Additional Information
To view usage information:
$ module load genblastg
$ genblastG
Citation
If you publish research that uses genblastg you have to cite it as follows:
Rong She, Jeffrey Shih-Chieh Chu, Bora Uyar, Jun Wang, Ke Wang, Nansheng Chen, genBlastG: using BLAST searches to build homologous gene models, Bioinformatics, Volume 27, Issue 15, August 2011, Pages 2141–2143, https://doi.org/10.1093/bioinformatics/btr342