ZUMIS: Difference between revisions
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Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|zumis}} |{{#vardefine:url|https://github.com/sdparekh/zUMIs}} <!--CONFIGURAT..." |
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Latest revision as of 17:55, 22 August 2022
Description
zUMIs is a fast and flexible pipeline to process RNA-seq data with (or without) UMIs.
The input to this pipeline is simply fastq files. In the most common cases, you will have a read containing the cDNA sequence and other read(s) containing UMI and Cell Barcode information. Furthermore, you will need a STAR index for your genome and GTF annotation file.
Environment Modules
Run module spider zumis to find out what environment modules are available for this application.
System Variables
- HPC_ZUMIS_DIR - installation directory
- HPC_ZUMIS_BIN - executable directory