Difference between revisions of "SALSA"
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|{{#vardefine:app|salsa}} | |{{#vardefine:app|salsa}} | ||
Revision as of 22:03, 21 August 2022
Description
A tool to scaffold long read assemblies with Hi-C
Environment Modules
Run module spider salsa to find out what environment modules are available for this application.
System Variables
- HPC_SALSA_DIR - installation directory
Citation
If you publish research that uses salsa you have to cite it as follows:
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.