Difference between revisions of "KaKs"
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| − | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] | + | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|kaks}} | |{{#vardefine:app|kaks}} | ||
Latest revision as of 19:18, 15 August 2022
Description
KaKs_Calculator adopts model selection and model averaging to calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to include as many features as needed for accurately capturing evolutionary information in protein-coding sequences. In addition, several existing methods for calculating Ka and Ks are also incorporated into KaKs_Calculator.
Environment Modules
Run module spider kaks to find out what environment modules are available for this application.
System Variables
- HPC_KAKS_DIR - installation directory