Difference between revisions of "V-pipe"
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Johnbullard (talk | contribs) (Created page with "Category:Software Category:Biology Category:Genomics Category:Workflow {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|v-pipe}} |{{#vardefine:url|https://cb...") |
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Revision as of 18:51, 15 August 2022
Description
V-pipe is a workflow designed for analysis of next generation sequencing (NGS) data from viral pathogens. It produces a number of results in a curated format.
Environment Modules
Run module spider v-pipe to find out what environment modules are available for this application.
System Variables
- HPC_V-PIPE_DIR - installation directory
- HPC_V-PIPE_BIN - executable directory
Citation
If you publish research that uses v-pipe you have to cite it as follows:
Posada-Céspedes S., Seifert D., Topolsky I., Jablonski K., Metzner K.J., and Beerenwinkel N. 2021. "V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data." Bioinformatics, January. doi:10.1093/bioinformatics/btab015.