Difference between revisions of "GCE"
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Johnbullard (talk | contribs) (Created page with "Category:Software Category:Biology Category:Bioinformatics Category:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gce}} |{{#vardefine:url|https:/...") |
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Latest revision as of 18:57, 12 August 2022
Description
gce website
GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample, developed by Binghang Liu binghang.liu@qq.com). The estimated result can be used to design the sequencing strategy.
Environment Modules
Run module spider gce to find out what environment modules are available for this application.
System Variables
- HPC_GCE_DIR - installation directory
- HPC_GCE_BIN - executable directory
Citation
If you publish research that uses gce you have to cite it as follows:
Binghang Liu, Yujian Shi, Jianying Yuan, et al. and Wei Fan*. Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome project. arXiv.org arXiv: 1308.2012. (2013)
https://arxiv.org/abs/1308.2012