MRtrix: Difference between revisions
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== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 17:36, 10 June 2022
Description
MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
Environment Modules
Run module spider mrtrix to find out what environment modules are available for this application.
System Variables
- HPC_MRTRIX_DIR - installation directory
- HPC_MRTRIX_BIN - executable directory
Citation
If you publish research that uses mrtrix you have to cite it as follows:
Processing was performed using the MRtrix3 package (Tournier et al., 2019). J.-D. Tournier, R. E. Smith, D. Raffelt, R. Tabbara, T. Dhollander, M. Pietsch, D. Christiaens, B. Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage, 202 (2019), pp. 116–37.