Difference between revisions of "PBJelly"
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Revision as of 17:18, 10 June 2022
Description
PBJelly is a highly automated pipeline that aligns long sequencing reads (such a PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly's workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes.
Environment Modules
Run module spider PBJelly to find out what environment modules are available for this application.
System Variables
- HPC_PBJELLY_DIR - installation directory
- HPC_PBJELLY_BIN
- HPC_PBJELLY_CONF
- HPC_PBJELLY_TEST
Additional Information
This module includes the full PBSuite.