Difference between revisions of "LDhat"
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 17:09, 10 June 2022
Description
LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.
Environment Modules
Run module spider ldhat to find out what environment modules are available for this application.
System Variables
- HPC_LDHAT_DIR - installation directory
Additional Information
The following programs are included:
- convert: Simple manipulation of DNA sequence data
- pairwise: Parametric and nonparametric analyses of recombination
- interval: Estimation of variable recombination rates
- rhomap: Estimation of variable recombination rates in the presence of hotspots
- fin: Simulation of genetic variation data in LDhat format