Difference between revisions of "SCOP"
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Johnbullard (talk | contribs) (Created page with "Category:Software Category:Biology Category:Scaffolding Category:Assembly {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|SCOP}} |{{#vardefine:url|https://g...") |
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Revision as of 16:56, 1 June 2022
Description
SCOP is a scaffolder which utilizes the classification of vertices and the alignment information of edges to optimize scaffold graph. The contigs can be produced by any assembler. The input read data of SCOP is paired-end or Mate-pair read set, in which the left read library and the right read library should have the same read length.
Environment Modules
Run module spider SCOP to find out what environment modules are available for this application.
System Variables
- HPC_SCOP_DIR - installation directory
- HPC_SCOP_BIN - executable directory