Clover: Difference between revisions
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Johnbullard (talk | contribs) Created page with "Category:Software Category:Biology Category:Genomics Category:Assembly {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|clover}} |{{#vardefine:url|http://oz...." |
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|clover}} | |{{#vardefine:app|clover}} | ||
Revision as of 16:56, 1 June 2022
Description
Clover is a clustering-oriented de novo assembler for Illumina sequences, which bases on the de Bruijn graph method and utilizes a novel k-mer clustering approach from the overlap-based concept to improve the robustness with respect to sequencing error especially using large k-mers.Clover achieves a superior assembly quality in terms of corrected N50 and E-size.
Environment Modules
Run module spider clover to find out what environment modules are available for this application.
System Variables
- HPC_CLOVER_DIR - installation directory
- HPC_CLOVER_BIN - executable directory