Difference between revisions of "BloomTree"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] | + | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Data Mining]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|Bloomtree}} | |{{#vardefine:app|Bloomtree}} | ||
Revision as of 19:13, 27 May 2022
Description
The Sequence Bloom Tree (SBT) is a method that will allow you to index a set of short-read sequencing experiments and then query them quickly for a given sequence. The code base provided here is an implementation of SBT written in C++ and is open source.
Required Modules
Serial
- Bloomtree
System Variables
- HPC_BLOOMTREE_DIR - installation directory
Citation
If you publish research that uses Bloomtree you have to cite it as follows: