Difference between revisions of "Pyrpipe"
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[[Category:Software]][[Category:Phylogenetics]] | [[Category:Software]][[Category:Phylogenetics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|pyrpipe}} |
|{{#vardefine:url|https://github.com/urmi-21/pyrpipe}} | |{{#vardefine:url|https://github.com/urmi-21/pyrpipe}} | ||
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
Latest revision as of 15:22, 16 March 2020
Description
pyrpipe (Pronounced as "pyre-pipe") is a python package to easily develop RNA-Seq analyses workflow by integrating popular RNA-Seq analysis programs in an object oriented manner. pyrpipe can be used on local computers or on HPC environments to manage analysis of RNA-Seq data. Users can use the easy-to-use APIs to popular bioinformatic tools provided with pyrpipe, or can use the methods provided in the pyrpipe_engine module to integrate any other third-party program in their pipeline.
Environment Modules
Run module spider pyrpipe to find out what environment modules are available for this application.
System Variables
- HPC_PYRPIPE_DIR - installation directory
- HPC_PYRPIPE_BIN - executable directory