Difference between revisions of "TEToolkit"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|tetoolkit}} |{{#vardefine:url|ht...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 36: | Line 36: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:29, 6 December 2019
Description
TEtranscripts takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. It then performs differential analysis using DESeq.
Required Modules
Serial
- gcc/5.2.0
- tetoolkit
System Variables
- HPC_TETOOLKIT_DIR - installation directory
- HPC_TETOOLKIT_BIN - executable directory