Difference between revisions of "TAPIS"
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| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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Revision as of 21:29, 6 December 2019
Description
TAPIS (Transriptome Analysis Pipeline from Isoform Sequencing) is a program for correcting and aligning long reads with/without second generation reads, transcript clustering, novel and full-length splice isoform detection, and identification and analysis of polyadenylation (poly(A)) and alternative poly(A) (APA).
Required Modules
Serial
- gcc/5.2.0
- tapis
System Variables
- HPC_TAPIS_DIR - installation directory