Difference between revisions of "Sputnik"
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==System Variables== | ==System Variables== | ||
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Revision as of 21:24, 6 December 2019
Description
Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors.
Required Modules
Serial
- sputnik
System Variables
- HPC_SPUTNIK_DIR - installation directory
Validation
- Validated 4/5/2018