SOAPdenovo-Trans: Difference between revisions
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Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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*{{#var:app}} | *{{#var:app}} | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located | * HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located | ||
<!--Additional--> | <!--Additional--> | ||
Revision as of 21:24, 6 December 2019
Description
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.
Required Modules
Serial
- soapdenovo-trans
System Variables
- HPC_SOAPDENOVO-TRANS_DIR - installation directory
- HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located
Validation
- Validated 4/5/2018