Difference between revisions of "SHAPEIT"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:24, 6 December 2019
Description
SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.
Required Modules
Serial
- shapeit
System Variables
- HPC_SHAPEIT_DIR - installation directory
Citation
If you publish research that uses shapeit you have to cite it as follows:
https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html#citations
Validation
- Validate 4/5/2018