Difference between revisions of "Platanus"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|platanus}} |{{#vardefine:url|http://platanus.bio.titech.ac.jp/platanus-assem...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - exectuable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:23, 6 December 2019
Description
Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data.
Environment Modules
Run module spider platanus to find out what environment modules are available for this application.
System Variables
- HPC_PLATANUS_DIR - installation directory
- HPC_PLATANUS_BIN - exectuable directory
Additional Information
This module includes the following platanus executables:
- Platanus Assembler
- Platanus-alle (Platanus2)
- Pltanus_trim
- MetaPlatanus
- BactSNP
Citation
If you publish research that uses platanus you have to cite it as follows: