Difference between revisions of "NeEstimator"
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Revision as of 21:23, 6 December 2019
Description
NeEstimator is a tool for estimating contemporary effective population size (Ne) using multi-locus diploid genotypes from population samples.
Required Modules
Serial
- neestimator
System Variables
- HPC_NEESTIMATOR_DIR - installation directory
Additional Information
This software is inside of the container.
Usage example:
Ne2L
If you are using GUI part of the software:
ml gui launch_gui_session --module neestimator -e NeEstimator
Connect with xpra locally using the xpra command
xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713
Citation
If you publish research that uses neestimator you have to cite it as follows:
“We estimated Ne using the molecular co-ancestry method of Nomura (2008), as implemented in NeEstimator V2.01 (Do et al. In Press.).”