Difference between revisions of "PLAST"
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Revision as of 21:22, 6 December 2019
Description
PLAST is a parallel alignment search tool for comparing large protein banks. PLAST runs 3 to 5 times faster than the NCBI-BLAST software when processing large amount of data.
The following features are currently available:
- Protein vs protein (plastp), protein vs nucleotide (tplastn),
nucleotide vs protein (plastx) and nucleotide vs nucleotide (tplastx) searches.
- Query filtering using SEG low complexity filters.
- Karlin-Altschul alignment statistics.
- Composition-based score adjustments as in Bioinformatics 21:902-911
for plastp and tplastn.
Required Modules
Serial
- plast
System Variables
- HPC_PLAST_DIR - installation directory
Validation
- Validated 4/5/2018