Difference between revisions of "Coot"
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(Created page with "Category:SoftwareCategory:Modeling {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|coot}} |{{#vardefine:url|https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/}}...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:17, 6 December 2019
Description
Coot is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data.
Coot displays maps and models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, skeletonization, non-crystallographic symmetry and more.
Environment Modules
Run module spider coot to find out what environment modules are available for this application.
System Variables
- HPC_COOT_DIR - installation directory
- HPC_COOT_BIN - executable directory
Citation
If you publish research that uses coot you have to cite it as follows:
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/docs/coot-faq.html#Citing