Difference between revisions of "BESST"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:13, 6 December 2019
Description
BESST is a package for scaffolding genomic assemblies. It contains several modules for e.g. building a "contig graph" from available information, obtaining scaffolds from this graph, and accurate gap size information (based on GapEst [1]).
Required Modules
Serial
- gcc/5.2.0
- besst
System Variables
- HPC_BESST_DIR - installation directory
Citation
If you publish research that uses besst you have to cite it as follows: