BAM-matcher: Difference between revisions
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Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bam-matcher}} |{{#vardefine:url|https://bitbucket.org/sacgf/bam-matcher/src}..." |
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_EXE - example directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_CONF - config directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:07, 6 December 2019
Description
A simple tool for determining whether two BAM files contain reads sequenced from the same sample or patient by counting genotype matches at common SNPs.
BAM-matcher is most useful at comparing whole-genome-sequencing (WGS), whole-exome-sequencing (WES) and RNA-sequencing (RNA-seq) human data, but can also be customised to compare panel data or non-human data.
Environment Modules
Run module spider bam-matcher to find out what environment modules are available for this application.
System Variables
- HPC_BAM-MATCHER_DIR - installation directory
- HPC_BAM-MATCHER_BIN - executable directory
- HPC_BAM-MATCHER_EXE - example directory
- HPC_BAM-MATCHER_CONF - config directory
Citation
If you publish research that uses bam-matcher you have to cite it as follows: