Difference between revisions of "Cogent"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|cogent}} |{{#vardefine:url|https://github.com/Magdoll/Co...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_LIB - library directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - test data directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:06, 6 December 2019
Description
Cogent is a tool for reconstructing the coding genome using high-quality full-length transcriptome sequences. It is designed to be used on Iso-Seq data and in cases where there is no reference genome or the ref genome is highly incomplete.
Environment Modules
Run module spider cogent to find out what environment modules are available for this application.
System Variables
- HPC_COGENT_DIR - installation directory
- HPC_COGENT_BIN - executable directory
- HPC_COGENT_LIB - library directory
- HPC_COGENT_EXE - test data directory