Difference between revisions of "AFNI"
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Revision as of 20:51, 6 December 2019
Description
AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity. It should be used for research purposes only.
Required Modules
Serial
- afni
System Variables
- HPC_{{#uc:afni}}_DIR
Additional Information
This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
Basic usage:
module load gui launch_gui_session --module afni -e afni
Connect with xpra locally using the xpra command
xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713
Citation
If you publish research that uses afni you have to cite it as follows:
RW Cox. AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages. Computers and Biomedical Research, 29:162-173, 1996.
RW Cox and JS Hyde. Software tools for analysis and visualization of FMRI Data. NMR in Biomedicine, 10:171-178, 1997.
S Gold, B Christian, S Arndt, G Zeien, T Cizadlo, DL Johnson, M Flaum, and NC Andreasen. Functional MRI statistical software packages: a comparative analysis. Human Brain Mapping, 6:73-84, 1998.