Difference between revisions of "Unicycler"
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Revision as of 21:45, 6 September 2019
Description
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
Environment Modules
Run module spider unicycler to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:unicycler}}_DIR - installation directory
- HPC_{{#uppercase:unicycler}}_BIN - executable directory