Difference between revisions of "AFNI"
Moskalenko (talk | contribs) |
|||
| Line 41: | Line 41: | ||
{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs | |
| − | module load | + | Basic usage: |
| − | + | module load gui | |
| + | launch_gui_session --module afni -e afni | ||
| − | + | Connect with xpra locally using the xpra command | |
| + | xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713 | ||
|}} | |}} | ||
Revision as of 17:31, 16 April 2018
Description
AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity. It should be used for research purposes only.
Required Modules
Serial
- afni
System Variables
- HPC_{{#uppercase:afni}}_DIR
Additional Information
This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
Basic usage:
module load gui launch_gui_session --module afni -e afni
Connect with xpra locally using the xpra command
xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713
Citation
If you publish research that uses afni you have to cite it as follows:
RW Cox. AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages. Computers and Biomedical Research, 29:162-173, 1996.
RW Cox and JS Hyde. Software tools for analysis and visualization of FMRI Data. NMR in Biomedicine, 10:171-178, 1997.
S Gold, B Christian, S Arndt, G Zeien, T Cizadlo, DL Johnson, M Flaum, and NC Andreasen. Functional MRI statistical software packages: a comparative analysis. Human Brain Mapping, 6:73-84, 1998.