Difference between revisions of "MATS"
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See the [[{{PAGENAME}}_Install]] page for {{#var: app}} installation notes.|}} | See the [[{{PAGENAME}}_Install]] page for {{#var: app}} installation notes.|}} | ||
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Revision as of 15:54, 5 April 2018
Description
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns.
Required Modules
Serial
- mats
System Variables
- HPC_{{#uppercase:mats}}_DIR - installation directory
- HPC_MATS_BIN - executable directory
Validation
- Validated 4/5/2018