Difference between revisions of "FAR"
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Revision as of 15:42, 5 April 2018
Description
FAR is a software that removes adapter sequences from your sequencing reads by overlap alignment using the Needleman Wunsch algorithm (default) or a quality-based variant of the Needleman Wunsch algorithm. The Needleman Wunsch algorithm is a global exact string-matching algorithm, which offers maximal sensitivity and outperforms heuristic algorithm such as BLAST. Therefore the alignment of an adapter sequence to a read is very accurate.
Required Modules
Serial
- far
System Variables
- HPC_{{#uppercase:far}}_DIR - installation directory
- LD_LIBRARY_PATH - run time library path
Validation
- Validated 4/5/2018